But it appears that I can only have one or the other in use at a time. I don’t appear to be able to control pwm on GPIO17/GPIO27 MRAA pins 11 & 13 at the same time?
I’m quite sure, that not. You can thing of the X_mY as possible multiplexed output, i.e. the CPU allows you to route the function X to a set of GPIOs Y. So even if it would be possible, its “gain” is small, you placed the same GPIO function to two GPIO pins. The _mY multiplexers allows to to combine more “different” function together that would not be possible with the “pi standard layout”, at the price that different pins of your header are used (so it is not “standard” anymore).
Sorry let me be clear I do not what to mirror the PWM output from 1 pin to the other. I just need to be able to use mraa Pin 13 for controlling LED and mraa Pin 11 for another PWM requirement. But it seems that I can only use a single PWM channel full stop.
CM3 claims to have 9 Hardware PWM pins but may be limited by kernel or something?