no, pcb cleaner is used to clean flux, which is needed for soldering,
If board was used normally just blow some air to not have any dust there, paint eMMC pads with flux
If You really need to do that,
most comes with them ready to install,
probably You will not do that better for first time,
If You need to reball module, place it on holder, preheat, add flux, mix tin, use solder wick to remove tin, then pcb cleaner, flux, add solder balls (or solder paste) via stencil, then heat and stencil remove, yet another cleaning. Some prefer to remove stencil before heat, this depends on materials (sometimes everything sticks to stencil), without it You can easily blow balls away.
If I understand You correctly, You want to put tin on both sides?
No, You should have them only on eMMC and flux on Rock pcb.
Board should be preheated first to not add too much temperature difference (this can brake something),
Preheat below tin melt point, then add chip, position it and add temp to melt balls under chip.
Yes, this one is correct. You should see when it settles and additionally You can touch it with some tool to get sure that it floats on both sides and balls are on pads.
What You want to dry? You missed cleaning flux at the end, if You using ipa then hot air helps indeed to get everything dry, but flux should be removed with some cleaning pads, without that it will just move somewhere on pcb eventually causing corrosion.
Just leave it for few minutes,
Practice on something else to be sure.
You can get all nuc with same pads for eMMC for few bucks. You can try on on any electronics to remove and resolder some elements. You can buy for few bucks PCB rulers to get PCB with solder pads to practice.
As I mentioned - You can easily get eMMC with solder balls and this makes whole process much easier for first time. Practice on something and You will quickly know is it worth to risk, still You can find profesional service near You.